Difference: TestCluster (3 vs. 4)

Revision 42015-11-21 - PatrickKemmeren

Line: 1 to 1
 
META TOPICPARENT name="WebHome"

HPC Test Cluster

  • You can login on the submit host hpcs03.op.umcutrecht.nl. This host is available from outside. If you access the cluster from outside, use hpcs01/02 as a stepping stone.

  • Please try to compile, install and run your software and let us know what doesn't work.

  • The "modules" system works, and already provides some packages. Suggestions for more packages/versions welcome.

  • Use the "module" command to list and use packages like R, Python and Java:

[mmarinus@hpcs03 ~]$ R --version
-bash: R: command not found
[mmarinus@hpcs03 ~]$ module avail

--------------------------------- /hpc/local/CentOS7/modulefiles/Lang ----------------------------------
   Java/1.8.0_60    R/3.2.2    python/2.7.10 (D)    python/3.4.3

------------------------------- /hpc/local/CentOS7/modulefiles/dev_tools -------------------------------
   rstudio/0.99.486

  Where:
   (D):  Default Module

Use "module spider" to find all possible modules.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".

[mmarinus@hpcs03 ~]$ module load R
[mmarinus@hpcs03 ~]$ R --version
WARNING: ignoring environment value of R_HOME
R version 3.2.2 (2015-08-14) -- "Fire Safety"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
http://www.gnu.org/licenses/.

Changed:
<
<
  • Every now and then I notice some strange delays. This could be related to the fact that your homedirectory is served from a machine in the "old" cluster. Let me know if you also notice this.
>
>
  -- Martin Marinus - 2015-10-08

Comments

<--/commentPlugin-->
 
This site is powered by the TWiki collaboration platform Powered by PerlCopyright © 2008-2020 by the contributing authors. All material on this collaboration platform is the property of the contributing authors.
Ideas, requests, problems regarding TWiki? Send feedback