TWiki's HPC webThe HPC web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise.https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPCCopyright 2020 by contributing authors2020-09-25T22:00:12ZWebStatisticshttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/WebStatistics2020-09-25T22:00:12ZStatistics for HPC Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and... (last changed by TWikiAdminGroup)TWikiAdminGroupSoftwareInstallationhttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/SoftwareInstallation2020-08-10T15:22:35ZSoftwareInstallation Can I install my own software? The answer is: yes, (of course) you can. There is a group specific directory that is made available for this purpose... (last changed by ReneJanssen)ReneJanssenSshCommandLinehttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/SshCommandLine2020-07-16T08:41:59ZSSH configuration for Mac and Linux # goto your homedirectory cd # create a .ssh directory mkdir .ssh # goto .ssh directory cd ~/.ssh # create a ssh keypair ssh keygen... (last changed by ReneJanssen)ReneJanssenSlurmSchedulerhttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/SlurmScheduler2020-05-26T12:27:47ZSlurm Starting in May 2019, we`re testing our new Slurm setup. Slurm is similar to GridEngine: it manages a cluster, distributing user jobs in (hopefully) a fair and... (last changed by MartinMarinus)MartinMarinusSlurmLimitshttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/SlurmLimits2020-05-26T09:54:21ZResource Limits in Slurm Very short summary The resources that we put limits on are: CPU, memory, GPU. And runtime, sort of. Whom do we limit this to? Not to you... (last changed by MartinMarinus)MartinMarinusPuTTyhttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/PuTTy2020-05-06T11:09:01ZConfigure Putty ssh client Download the Putty software : https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html Put in a directory on your local machine p... (last changed by MartinMarinus)MartinMarinusMoBaXtermhttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/MoBaXterm2020-05-06T11:08:26ZMobaxterm Configuration HPC To use the HPC you must use a ssh client. An example of this software is the Mobaxterm for Windows.(https://mobaxterm.mobatek.net/) To... (last changed by MartinMarinus)MartinMarinusHPCInTimesOfCovid19https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/HPCInTimesOfCovid192020-03-17T14:52:08ZHPC In Times Of Covid 19 (Un)limited Service Like most of you, we`re working from home at the moment. We try to provide the same service as always, so feel free... (last changed by MartinMarinus)MartinMarinusWebHomehttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/WebHome2020-03-03T14:02:30ZWelcome to the High Performance Computing (HPC) Facility wiki The High performance Computing (HPC) facility is setup to provide high performance computing power to... (last changed by ReneJanssen)ReneJanssenContactDetailshttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/ContactDetails2019-08-13T09:04:52ZContactDetails Initial contact Initial intakes for new research groups and general information about the HPC facility are handled by Jeroen de Ridder. Please contact... (last changed by ReneJanssen)ReneJanssenCromWellServicehttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/CromWellService2019-05-13T13:08:44ZCromwell workflow management system Cromwell is a workflow management system geared towards scientific workflows. More information can be found online. It can function... (last changed by ReneJanssen)ReneJanssenMyTesthttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/MyTest2019-05-13T09:47:23ZTitle Article text. Comments (last changed by ReneJanssen)ReneJanssenConditionsAndSupporthttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/ConditionsAndSupport2018-05-22T07:39:51ZConditions and Support Conditions In order to be able to use the HPC facility, you need to be affiliated with University Medical Center Utrecht, Utrecht University... (last changed by MartinMarinus)MartinMarinusParticipatingGroupshttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/ParticipatingGroups2017-12-08T11:19:26ZParticipatingGroups University Medical Center Utrecht Division Biomedical Genetics Edwin Cuppen, Medical Genetics David Egan, Cellbiology Wigard Kloosterman... (last changed by PatrickKemmeren)PatrickKemmerenNewGatewayhttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/NewGateway2017-09-14T08:05:16ZNew Gateway on hpcgw.op.umcutrecht.nl We installed a new gateway server in the HPC named hpcgw.op.umcutrecht.nl. The old server gw.op.umcutrecht.nl will soon be disabled... (last changed by ReneJanssen)ReneJanssenPuttyTermhttps://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/PuttyTerm2017-08-25T11:11:39Zchange configuration Putty ssh client Load the current configuration for the gateway Change the configuration and save (last changed by ReneJanssen)ReneJanssen
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