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TWiki's HPC web The HPC web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC Copyright 2020 by contributing authors 2020-09-25T22:00:12Z WebStatistics https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/WebStatistics 2020-09-25T22:00:12Z Statistics for HPC Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and... (last changed by TWikiAdminGroup) TWikiAdminGroup SoftwareInstallation https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/SoftwareInstallation 2020-08-10T15:22:35Z SoftwareInstallation Can I install my own software? The answer is: yes, (of course) you can. There is a group specific directory that is made available for this purpose... (last changed by ReneJanssen) ReneJanssen SshCommandLine https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/SshCommandLine 2020-07-16T08:41:59Z SSH configuration for Mac and Linux # goto your homedirectory cd # create a .ssh directory mkdir .ssh # goto .ssh directory cd ~/.ssh # create a ssh keypair ssh keygen... (last changed by ReneJanssen) ReneJanssen SlurmScheduler https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/SlurmScheduler 2020-05-26T12:27:47Z Slurm Starting in May 2019, we`re testing our new Slurm setup. Slurm is similar to GridEngine: it manages a cluster, distributing user jobs in (hopefully) a fair and... (last changed by MartinMarinus) MartinMarinus SlurmLimits https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/SlurmLimits 2020-05-26T09:54:21Z Resource Limits in Slurm Very short summary The resources that we put limits on are: CPU, memory, GPU. And runtime, sort of. Whom do we limit this to? Not to you... (last changed by MartinMarinus) MartinMarinus PuTTy https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/PuTTy 2020-05-06T11:09:01Z Configure Putty ssh client Download the Putty software : https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html Put in a directory on your local machine p... (last changed by MartinMarinus) MartinMarinus MoBaXterm https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/MoBaXterm 2020-05-06T11:08:26Z Mobaxterm Configuration HPC To use the HPC you must use a ssh client. An example of this software is the Mobaxterm for Windows.(https://mobaxterm.mobatek.net/) To... (last changed by MartinMarinus) MartinMarinus HPCInTimesOfCovid19 https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/HPCInTimesOfCovid19 2020-03-17T14:52:08Z HPC In Times Of Covid 19 (Un)limited Service Like most of you, we`re working from home at the moment. We try to provide the same service as always, so feel free... (last changed by MartinMarinus) MartinMarinus WebHome https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/WebHome 2020-03-03T14:02:30Z Welcome to the High Performance Computing (HPC) Facility wiki The High performance Computing (HPC) facility is setup to provide high performance computing power to... (last changed by ReneJanssen) ReneJanssen ContactDetails https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/ContactDetails 2019-08-13T09:04:52Z ContactDetails Initial contact Initial intakes for new research groups and general information about the HPC facility are handled by Jeroen de Ridder. Please contact... (last changed by ReneJanssen) ReneJanssen CromWellService https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/CromWellService 2019-05-13T13:08:44Z Cromwell workflow management system Cromwell is a workflow management system geared towards scientific workflows. More information can be found online. It can function... (last changed by ReneJanssen) ReneJanssen MyTest https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/MyTest 2019-05-13T09:47:23Z Title Article text. Comments (last changed by ReneJanssen) ReneJanssen ConditionsAndSupport https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/ConditionsAndSupport 2018-05-22T07:39:51Z Conditions and Support Conditions In order to be able to use the HPC facility, you need to be affiliated with University Medical Center Utrecht, Utrecht University... (last changed by MartinMarinus) MartinMarinus ParticipatingGroups https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/ParticipatingGroups 2017-12-08T11:19:26Z ParticipatingGroups University Medical Center Utrecht Division Biomedical Genetics Edwin Cuppen, Medical Genetics David Egan, Cellbiology Wigard Kloosterman... (last changed by PatrickKemmeren) PatrickKemmeren NewGateway https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/NewGateway 2017-09-14T08:05:16Z New Gateway on hpcgw.op.umcutrecht.nl We installed a new gateway server in the HPC named hpcgw.op.umcutrecht.nl. The old server gw.op.umcutrecht.nl will soon be disabled... (last changed by ReneJanssen) ReneJanssen PuttyTerm https://wiki.bioinformatics.umcutrecht.nl/bin/view/HPC/PuttyTerm 2017-08-25T11:11:39Z change configuration Putty ssh client Load the current configuration for the gateway Change the configuration and save (last changed by ReneJanssen) ReneJanssen
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