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| > > | Recent Changes in HPC Web retrieved at 00:21 (GMT)<-- remove the format parameter to show absolute date instead if topic age --> <--/twikiTopRow--> Statistics for HPC Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> SSH configuration for Mac and Linux # goto your homedirectory cd # create a .ssh directory mkdir .ssh # goto .ssh directory cd ~/.ssh # create a ssh keypair ssh keygen... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Slurm Starting in May 2019, we`re testing our new Slurm setup. Slurm is similar to GridEngine: it manages a cluster, distributing user jobs in (hopefully) a fair and... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> SoftwareInstallation Can I install my own software? The answer is: yes, (of course) you can. There is a group specific directory that is made available for this purpose... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Resource Limits in Slurm Very short summary The resources that we put limits on are: CPU, memory, GPU. And runtime, sort of. Whom do we limit this to? Not to you... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Configure Putty ssh client Download the Putty software : https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html Put in a directory on your local machine p... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Mobaxterm Configuration HPC To use the HPC you must use a ssh client. An example of this software is the Mobaxterm for Windows.(https://mobaxterm.mobatek.net/) To... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> HPC In Times Of Covid 19 (Un)limited Service Like most of you, we`re working from home at the moment. We try to provide the same service as always, so feel free... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Welcome to the High Performance Computing (HPC) Facility wiki The High performance Computing (HPC) facility is setup to provide high performance computing power to... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> ContactDetails Initial contact Initial intakes for new research groups and general information about the HPC facility are handled by Jeroen de Ridder. Please contact... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Cromwell workflow management system Cromwell is a workflow management system geared towards scientific workflows. More information can be found online. It can function... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Title Article text. Comments <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Conditions and Support Conditions In order to be able to use the HPC facility, you need to be affiliated with University Medical Center Utrecht, Utrecht University... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> ParticipatingGroups University Medical Center Utrecht Division Biomedical Genetics Edwin Cuppen, Medical Genetics David Egan, Cellbiology Wigard Kloosterman... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> New Gateway on hpcgw.op.umcutrecht.nl We installed a new gateway server in the HPC named hpcgw.op.umcutrecht.nl. The old server gw.op.umcutrecht.nl will soon be disabled... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> change configuration Putty ssh client Load the current configuration for the gateway Change the configuration and save <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Howto create your own/group software modules Introduction Often a program requires particular environment variables in order to run. LMOD environment modules provide... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> MobaXterm change configuration edit configuration and change hostname <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Irods Information The irods(https://irods.org/) commandline client software is installed in the hpct01 and hpct02 servers of the HPC. On these transfer servers you... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> HPCUserCouncil To steer future directions for the high performance computing (HPC) research infrastructure, a HPC user council has been setup. This council will advise... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Test cluster queue setup There are a few changes in the queuing setup: On the `old` cluster, there were five queues: veryshort, short, medium, long, verylong... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> HPC Web Preferences The following settings are web preferences of the HPC web. These preferences overwrite the site level preferences in . and... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> HPC Test Cluster You can login on the submit host hpcs03.op.umcutrecht.nl. This host is available from outside. If you access the cluster from outside, use hpcs... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> How to install a specific version of R R is installed by default, on the submit hosts and on the nodes, so usually it is unnecessary (and even slightly undesirable... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> We are happy to announce that the HPC news blog is now online! <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> This is a subscription service to be automatically notified by e mail when topics change in this 1 web. This is a convenient service, so you do not have to come... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> Top Menu of HPC Web This topic defines the menu structure of the HPC web, used by the TopMenuSkin. 1 Web` Create New Topic... <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> 1 Web Create New Topic Index Search Changes Notifications RSS Feed Statistics Preferences <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> TWiki`s HPC web The 1 web of TWiki. TWiki is a Web Based Collaboration Platform for the Enterprise. <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult--> <--/twikiTopRow--> /HPC The 1 web of TWiki. TWiki is a Web Based Collaboration Platform for the Enterprise. <--/twikiSummary--> <--/twikiBottomRow--> <--/patternSearchResult-->Show 10, 20, 50, 100, 500, 1000 results per page, or show all. Related topics:  RSS feed, ATOM feed, WebNotify, site changes, site map | |||||||
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