Difference: InterWikis (11 vs. 12)

Revision 122015-03-25 - PhilipLijnzaad

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Inter-Wiki Link Rules (or Links to other Sites)

This topic lists all aliases needed to map Inter-Site links to external wikis/sites.

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Whenever you write ExternalSite:Page it will be linked automatically to the page on the external site. The link points to the URL corresponding to the ExternalSite alias below, concatenated to the Page you choose. Example: Type Wiki:RecentChanges to get Wiki:RecentChanges, the RecentChanges page at the original Wiki site.
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Whenever you write ExternalSite:Page it will be linked automatically to the page on the external site. The link points to the URL corresponding to the ExternalSite alias below, concatenated to the Page you choose. Example: Type Wiki:RecentChanges to get Wiki:RecentChanges, the RecentChanges page at the original Wiki site.
 

How to define Inter-Site links

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  • The URL and Tooltip Text may contain optional $page variables; the variable gets expanded to the page name.
  • Note: The Tooltip Text must not contain any HTML tags (including <nop> escape code), no internal WikiWord links, and no external links. Hint: Escape 'WikiWords' and '$page'.
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Local

Alias:
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Sorted ascending
URL: Tooltip Text:
Help http://bioinformatics.holstegelab.nl/twiki/bin/view/Help/$page Help TWiki
Mantis http://bioinformatics.holstegelab.nl/mantis/view.php?id=$page Bug reports/feature requests in Mantis. e.g. Mantis:85

Biological databases

Alias: URL: Tooltip Text:
BLASTPRODOM http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$page domains
EC http://ca.expasy.org/cgi-bin/nicezyme.pl?$page The Enzyme database. E.g.: EC:2.1.1.137
EMBL http://www.ebi.ac.uk/cgi-bin/dbfetch?db=emblsva;id=$page EMBL sequence database. E.g. EMBL:AK223183
Enshuman http://www.ensembl.org/Homo_sapiens/geneview?gene=$page Human genes from Ensembl. E.g.: Enshuman:ENSG00000157399
Ensmouse http://www.ensembl.org/Mus_musculus/geneview?gene=$page Mouse genes from Ensembl. E.g.: Ensmouse:ENSMUSG00000020604
Ensrat http://www.ensembl.org/Rattus_norvegicus/geneview?gene=$page Mouse genes from Ensembl. E.g.: Ensrat:ENSRNOG00000003931
Entrez http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$page GenBank /Embl genes e.g.: Entrez:X83573
GENE3D http://cathwww.biochem.ucl.ac.uk:8080/Gene3D/this-is-broken gene3d
GO http://www.godatabase.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=$page Gene Ontology (standardized gene annotation). E.g.: GO:0002345
Genecards http://www.genecards.org/cgi-bin/carddisp.pl?gene=$page HGeneCard database; excellent overview. E.g.: Genecards:AS3MT
HGCN http://www.genenames.org/data/hgnc_data.php?app_sym=$page Human Genome Nomenclature Committee. E.g.: HGCN:LMNB1
HMMPANTHER http://www.pantherdb.org/panther/family.do?clsAccession=$page panther family database
HMMPFAM http://www.sanger.ac.uk//cgi-bin/Pfam/getacc?$page Pfam
HMMSMART http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$page Smart
IPR http://www.ebi.ac.uk/interpro/ISearch?query=$page interpro motif/domain database
MGI http://www.informatics.jax.org/searches/accession_report.cgi?id=$page Mouse Genome Informatics database. E.g.: MGI:1921258
OMIM http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=$page Disease database. E.g.: OMIM:600185
PANTHER http://www.pantherdb.org/panther/family.do?clsAccession=$page Panther family database
PANTHERFAM http://www.pantherdb.org/panther/family.do?clsAccession=$page Panther family database
PDB http://www.rcsb.org/pdb/explore/explore.do?structureId=$page Protein structure database. E.g.: PDB:1P2P
PDBsum http://www.ebi.ac.uk/pdbsum/$page protein structure summaries, e.g. PDBsum:1kfv
PFAM http://www.sanger.ac.uk//cgi-bin/Pfam/getacc?$page Pfam
PIRSF http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$page PIR superfamilies
PRODOM http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$page domains
PROFILESCAN http://www.expasy.ch/cgi-bin/prosite-search-ac?$page Prosite profiles
PROSITE http://www.expasy.ch/cgi-bin/prosite-search-ac?$page Prosite profiles
RGD http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$page The rat genome database. E.g.: RGD:620306
SGD http://db.yeastgenome.org/cgi-bin/locus.pl?locus=$page Yeast genome database page of given ORF. E.g.: SGD:yjl103c
SMART http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$page Smart
SUPERFAMILY http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$page PIR superfamilies
Swiss http://www.expasy.org/uniprot/$page Swissprot/Uniprot protein sequence database E.g.: Swiss:P51690
 

General Inter-Site Links

Alias: URL: Tooltip Text:
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Acronym http://www.acronymfinder.com/af-query.asp?Acronym=$page&String=exact Look up '$page' on Acronym Finder site
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Wikipedia http://en.wikipedia.org/wiki/$page Go to the Wikipedia page, e.g. Wikipedia:DNA_microarray
DOI http://dx.doi.org/$page Retrieve document by Digital Object Identifier, e.g. DOI:10.1038/nsmb.1636
PMID http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&query_hl=1&list_uids=$page Pubmed ID. E.g.: PMID:16413477
 
CPAN http://search.cpan.org/perldoc? CPAN perl repository
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Dictionary http://www.dictionary.com/cgi-bin/dict.pl?term= Look up '$page' at Dictionary.com
 
Google http://google.com/search?q= Search for '$page' on Google
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Group http://groups.google.com/groups?hl=en&safe=off&group= News group '$page' at Google.com
 
ISBN http://www.bookfinder.com/search/?st=sr;ac=qr;isbn= Book with ISBN $page
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News http://news.google.com/news?q= Search for '$page' on Google news
 
RFC http://www.faqs.org/rfcs/rfc$page.html IETF RFC #$page

 
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