HPC Test Cluster
- You can login on the submit host hpcs03.op.umcutrecht.nl. This host is available from outside. If you access the cluster from outside, use hpcs01/02 as a stepping stone.
- Please try to compile, install and run your software and let us know what doesn't work.
- The "modules" system works, and already provides some packages. Suggestions for more packages/versions welcome.
- Use the "module" command to list and use packages like R, Python and Java:
[mmarinus@hpcs03 ~]$ R --version
-bash: R: command not found
[mmarinus@hpcs03 ~]$ module avail
--------------------------------- /hpc/local/CentOS7/modulefiles/Lang ----------------------------------
Java/1.8.0_60 R/3.2.2 python/2.7.10 (D) python/3.4.3
------------------------------- /hpc/local/CentOS7/modulefiles/dev_tools -------------------------------
rstudio/0.99.486
Where:
(D): Default Module
Use "module spider" to find all possible modules.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
[mmarinus@hpcs03 ~]$ module load R
[mmarinus@hpcs03 ~]$ R --version
WARNING: ignoring environment value of R_HOME
R version 3.2.2 (2015-08-14) -- "Fire Safety"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
http://www.gnu.org/licenses/.
--
Martin Marinus - 2015-10-08
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