Inter-Wiki Link Rules (or Links to other Sites)

This topic lists all aliases needed to map Inter-Site links to external wikis/sites.

Whenever you write ExternalSite:Page it will be linked automatically to the page on the external site. The link points to the URL corresponding to the ExternalSite alias below, concatenated to the Page you choose. Example: Type Wiki:RecentChanges to get Wiki:RecentChanges, the RecentChanges page at the original Wiki site.

How to define Inter-Site links

Inter-Site links are defined in the tables below.
Each entry must be of format:
| External site alias | URL | Tooltip help text |.
The Alias must start with an upper case letter and may contain alphanumeric letters.
The URL and Tooltip Text may contain optional $page variables; the variable gets expanded to the page name.
Note: The Tooltip Text must not contain any HTML tags (including <nop> escape code), no internal WikiWord links, and no external links. Hint: Escape 'WikiWords' and '$page'.

Local

Alias:	URL:	Tooltip Text:
Mantis	http://bioinformatics.holstegelab.nl/mantis/view.php?id=$page	Bug reports/feature requests in Mantis. e.g. Mantis:85
Help	http://bioinformatics.holstegelab.nl/twiki/bin/view/Help/$page	Help TWiki

Biological databases

Alias:	URL:	Tooltip Text:
BLASTPRODOM	http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$page	domains
EC	http://ca.expasy.org/cgi-bin/nicezyme.pl?$page	The Enzyme database. E.g.: EC:2.1.1.137
EMBL	http://www.ebi.ac.uk/cgi-bin/dbfetch?db=emblsva;id=$page	EMBL sequence database. E.g. EMBL:AK223183
Enshuman	http://www.ensembl.org/Homo_sapiens/geneview?gene=$page	Human genes from Ensembl. E.g.: Enshuman:ENSG00000157399
Ensmouse	http://www.ensembl.org/Mus_musculus/geneview?gene=$page	Mouse genes from Ensembl. E.g.: Ensmouse:ENSMUSG00000020604
Ensrat	http://www.ensembl.org/Rattus_norvegicus/geneview?gene=$page	Mouse genes from Ensembl. E.g.: Ensrat:ENSRNOG00000003931
Entrez	http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$page	GenBank /Embl genes e.g.: Entrez:X83573
GENE3D	http://cathwww.biochem.ucl.ac.uk:8080/Gene3D/this-is-broken	gene3d
GO	http://www.godatabase.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=$page	Gene Ontology (standardized gene annotation). E.g.: GO:0002345
Genecards	http://www.genecards.org/cgi-bin/carddisp.pl?gene=$page	HGeneCard database; excellent overview. E.g.: Genecards:AS3MT
HGCN	http://www.genenames.org/data/hgnc_data.php?app_sym=$page	Human Genome Nomenclature Committee. E.g.: HGCN:LMNB1
HMMPANTHER	http://www.pantherdb.org/panther/family.do?clsAccession=$page	panther family database
HMMPFAM	http://www.sanger.ac.uk//cgi-bin/Pfam/getacc?$page	Pfam
HMMSMART	http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$page	Smart
IPR	http://www.ebi.ac.uk/interpro/ISearch?query=$page	interpro motif/domain database
MGI	http://www.informatics.jax.org/searches/accession_report.cgi?id=$page	Mouse Genome Informatics database. E.g.: MGI:1921258
OMIM	http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=$page	Disease database. E.g.: OMIM:600185
PANTHER	http://www.pantherdb.org/panther/family.do?clsAccession=$page	Panther family database
PANTHERFAM	http://www.pantherdb.org/panther/family.do?clsAccession=$page	Panther family database
PDB	http://www.rcsb.org/pdb/explore/explore.do?structureId=$page	Protein structure database. E.g.: PDB:1P2P
PDBsum	http://www.ebi.ac.uk/pdbsum/$page	protein structure summaries, e.g. PDBsum:1kfv
PFAM	http://www.sanger.ac.uk//cgi-bin/Pfam/getacc?$page	Pfam
PIRSF	http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$page	PIR superfamilies
PRODOM	http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$page	domains
PROFILESCAN	http://www.expasy.ch/cgi-bin/prosite-search-ac?$page	Prosite profiles
PROSITE	http://www.expasy.ch/cgi-bin/prosite-search-ac?$page	Prosite profiles
RGD	http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$page	The rat genome database. E.g.: RGD:620306
SGD	http://db.yeastgenome.org/cgi-bin/locus.pl?locus=$page	Trash/Yeast genome database page of given ORF. E.g.: SGD:yjl103c
SMART	http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$page	Smart
SUPERFAMILY	http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$page	PIR superfamilies
Swiss	http://www.expasy.org/uniprot/$page	Swissprot/Uniprot protein sequence database E.g.: Swiss:P51690

General Inter-Site Links

Alias:	URL:	Tooltip Text:
Wikipedia	http://en.wikipedia.org/wiki/$page	Go to the Wikipedia page, e.g. Wikipedia:DNA_microarray
DOI	http://dx.doi.org/$page	Retrieve document by Digital Object Identifier, e.g. DOI:10.1038/nsmb.1636
PMID	http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&query_hl=1&list_uids=$page	Pubmed ID. E.g.: PMID:16413477
CPAN	http://search.cpan.org/perldoc?	CPAN perl repository
Google	http://google.com/search?q=	Search for '$page' on Google
ISBN	http://www.bookfinder.com/search/?st=sr;ac=qr;isbn=	Book with ISBN $page
RFC	http://www.faqs.org/rfcs/rfc$page.html	IETF RFC #$page

Inter-Wiki Links

Alias:	URL:	Tooltip Text:
Advogato	http://www.advogato.org/	'$page' on Advogato community site (with peer review)
C2find	http://c2.com/cgi/wiki?FindPage&value=	Search '$page' on the original 'WikiWikiWeb' site
DokuWiki	http://wiki.splitbrain.org/wiki:	'$page' on Doku Wiki site
DolphinWiki	http://www.object-arts.co.uk/wiki/html/Dolphin/$page.htm	'$page' on Dolphin Wiki site
FoxWiki	http://fox.wikis.com/wc.dll?Wiki~	'$page' on Fox Wiki site
HammondWiki	http://www.dairiki.org/HammondWiki/index.php3?	'$page' on 'HammondWiki' site
LegoWiki	http://www.object-arts.com/wiki/html/Lego-Robotics/	'$page' on 'LegoWiki' site
MbTest	http://www.usemod.com/cgi-bin/mbtest.pl?	'$page' on 'UseMod' Wiki variant
MeatBall	http://www.usemod.com/cgi-bin/mb.pl?	'$page' on 'MeatBall' site, a 'UseMod' Wiki variant
MoinMoin	http://moinmoin.wikiwikiweb.de/	'$page' on 'MoinMoin' Wiki site
MuWeb	http://www.dunstable.com/scripts/MuWebWeb?	'$page' on 'MuWeb' site
OrgPatterns	http://www.easycomp.org/cgi-bin/OrgPatterns?	'$page' on Organizational Patterns site
PhpWiki	http://phpwiki.sourceforge.net/phpwiki/index.php3?	'$page' on Wiki site written in PHP
PolitizenWiki	http://www.politizen.com/wiki.asp?	'$page' on 'PolitizenWiki' site
PPR	http://c2.com/cgi/wiki?	'$page' on the original 'PortlandPatternRepository' site
PyWiki	http://www.voght.com/cgi-bin/pywiki?	'$page' on Wiki site written in Python
Squeak	http://minnow.cc.gatech.edu/squeak/	'$page' on Squeak Smalltalk Wiki
TWiki	http://twiki.org/cgi-bin/view/	'$page' on TWiki.org
TWikibug	http://develop.twiki.org/~twiki4/cgi-bin/view/Bugs/	'$page' on the TWiki issue tracking site
TWikirev	http://develop.twiki.org/trac/changeset/	revision $page of TWiki svn
TWikisvn	http://svn.twiki.org/svn/twiki/trunk/	Download '$page' file from TWiki SVN repository
UseMod	http://www.usemod.com/cgi-bin/wiki.pl?	'$page' on 'UseMod' Wiki site
VisualWorks	http://wiki.cs.uiuc.edu/VisualWorks/	'$page' on 'VisualWorks' site
Wiki	http://c2.com/cgi/wiki?	'$page' on the original 'WikiWikiWeb' site
Wikipedia	http://en.wikipedia.org/wiki/	'$page' on 'Wikipedia'
ZWiki	http://joyful.com/zwiki/	'$page' on Zope's Wiki

Note: This topic configures the InterwikiPlugin.