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Inter-Wiki Link Rules (or Links to other Sites)

This topic lists all aliases needed to map Inter-Site links to external wikis/sites.

Whenever you write ExternalSite:Page it will be linked automatically to the page on the external site. The link points to the URL corresponding to the ExternalSite alias below, concatenated to the Page you choose. Example: Type Wiki:RecentChanges to get Wiki:RecentChanges, the RecentChanges page at the original Wiki site.

How to define Inter-Site links

  • Inter-Site links are defined in the tables below.
  • Each entry must be of format:
    | External site alias | URL | Tooltip help text |.
  • The Alias must start with an upper case letter and may contain alphanumeric letters.
  • The URL and Tooltip Text may contain optional $page variables; the variable gets expanded to the page name.
  • Note: The Tooltip Text must not contain any HTML tags (including <nop> escape code), no internal WikiWord links, and no external links. Hint: Escape 'WikiWords' and '$page'.

Local

Alias: URL: Tooltip Text:
Mantis http://bioinformatics.holstegelab.nl/mantis/view.php?id=$page Bug reports/feature requests in Mantis. e.g. Mantis:85
Help http://bioinformatics.holstegelab.nl/twiki/bin/view/Help/$page Help TWiki

Biological databases

Alias: URL:Sorted ascending Tooltip Text:
EC http://ca.expasy.org/cgi-bin/nicezyme.pl?$page The Enzyme database. E.g.: EC:2.1.1.137
GENE3D http://cathwww.biochem.ucl.ac.uk:8080/Gene3D/this-is-broken gene3d
SGD http://db.yeastgenome.org/cgi-bin/locus.pl?locus=$page Trash/Yeast genome database page of given ORF. E.g.: SGD:yjl103c
BLASTPRODOM http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$page domains
PRODOM http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$page domains
RGD http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$page The rat genome database. E.g.: RGD:620306
HMMSMART http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$page Smart
SMART http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$page Smart
PIRSF http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$page PIR superfamilies
SUPERFAMILY http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$page PIR superfamilies
EMBL http://www.ebi.ac.uk/cgi-bin/dbfetch?db=emblsva;id=$page EMBL sequence database. E.g. EMBL:AK223183
IPR http://www.ebi.ac.uk/interpro/ISearch?query=$page interpro motif/domain database
PDBsum http://www.ebi.ac.uk/pdbsum/$page protein structure summaries, e.g. PDBsum:1kfv
Enshuman http://www.ensembl.org/Homo_sapiens/geneview?gene=$page Human genes from Ensembl. E.g.: Enshuman:ENSG00000157399
Ensmouse http://www.ensembl.org/Mus_musculus/geneview?gene=$page Mouse genes from Ensembl. E.g.: Ensmouse:ENSMUSG00000020604
Ensrat http://www.ensembl.org/Rattus_norvegicus/geneview?gene=$page Mouse genes from Ensembl. E.g.: Ensrat:ENSRNOG00000003931
PROFILESCAN http://www.expasy.ch/cgi-bin/prosite-search-ac?$page Prosite profiles
PROSITE http://www.expasy.ch/cgi-bin/prosite-search-ac?$page Prosite profiles
Swiss http://www.expasy.org/uniprot/$page Swissprot/Uniprot protein sequence database E.g.: Swiss:P51690
Genecards http://www.genecards.org/cgi-bin/carddisp.pl?gene=$page HGeneCard database; excellent overview. E.g.: Genecards:AS3MT
HGCN http://www.genenames.org/data/hgnc_data.php?app_sym=$page Human Genome Nomenclature Committee. E.g.: HGCN:LMNB1
GO http://www.godatabase.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=$page Gene Ontology (standardized gene annotation). E.g.: GO:0002345
MGI http://www.informatics.jax.org/searches/accession_report.cgi?id=$page Mouse Genome Informatics database. E.g.: MGI:1921258
OMIM http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=$page Disease database. E.g.: OMIM:600185
Entrez http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$page GenBank /Embl genes e.g.: Entrez:X83573
HMMPANTHER http://www.pantherdb.org/panther/family.do?clsAccession=$page panther family database
PANTHER http://www.pantherdb.org/panther/family.do?clsAccession=$page Panther family database
PANTHERFAM http://www.pantherdb.org/panther/family.do?clsAccession=$page Panther family database
PDB http://www.rcsb.org/pdb/explore/explore.do?structureId=$page Protein structure database. E.g.: PDB:1P2P
HMMPFAM http://www.sanger.ac.uk//cgi-bin/Pfam/getacc?$page Pfam
PFAM http://www.sanger.ac.uk//cgi-bin/Pfam/getacc?$page Pfam

General Inter-Site Links

Alias: URL: Tooltip Text:
Wikipedia http://en.wikipedia.org/wiki/$page Go to the Wikipedia page, e.g. Wikipedia:DNA_microarray
DOI http://dx.doi.org/$page Retrieve document by Digital Object Identifier, e.g. DOI:10.1038/nsmb.1636
PMID http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&query_hl=1&list_uids=$page Pubmed ID. E.g.: PMID:16413477
CPAN http://search.cpan.org/perldoc? CPAN perl repository
Google http://google.com/search?q= Search for '$page' on Google
ISBN http://www.bookfinder.com/search/?st=sr;ac=qr;isbn= Book with ISBN $page
RFC http://www.faqs.org/rfcs/rfc$page.html IETF RFC #$page

Inter-Wiki Links

Alias: URL: Tooltip Text:
Advogato http://www.advogato.org/ '$page' on Advogato community site (with peer review)
C2find http://c2.com/cgi/wiki?FindPage&value= Search '$page' on the original 'WikiWikiWeb' site
DokuWiki http://wiki.splitbrain.org/wiki: '$page' on Doku Wiki site
DolphinWiki http://www.object-arts.co.uk/wiki/html/Dolphin/$page.htm '$page' on Dolphin Wiki site
FoxWiki http://fox.wikis.com/wc.dll?Wiki~ '$page' on Fox Wiki site
HammondWiki http://www.dairiki.org/HammondWiki/index.php3? '$page' on 'HammondWiki' site
LegoWiki http://www.object-arts.com/wiki/html/Lego-Robotics/ '$page' on 'LegoWiki' site
MbTest http://www.usemod.com/cgi-bin/mbtest.pl? '$page' on 'UseMod' Wiki variant
MeatBall http://www.usemod.com/cgi-bin/mb.pl? '$page' on 'MeatBall' site, a 'UseMod' Wiki variant
MoinMoin http://moinmoin.wikiwikiweb.de/ '$page' on 'MoinMoin' Wiki site
MuWeb http://www.dunstable.com/scripts/MuWebWeb? '$page' on 'MuWeb' site
OrgPatterns http://www.easycomp.org/cgi-bin/OrgPatterns? '$page' on Organizational Patterns site
PhpWiki http://phpwiki.sourceforge.net/phpwiki/index.php3? '$page' on Wiki site written in PHP
PolitizenWiki http://www.politizen.com/wiki.asp? '$page' on 'PolitizenWiki' site
PPR http://c2.com/cgi/wiki? '$page' on the original 'PortlandPatternRepository' site
PyWiki http://www.voght.com/cgi-bin/pywiki? '$page' on Wiki site written in Python
Squeak http://minnow.cc.gatech.edu/squeak/ '$page' on Squeak Smalltalk Wiki
TWiki http://twiki.org/cgi-bin/view/ '$page' on TWiki.org
TWikibug http://develop.twiki.org/~twiki4/cgi-bin/view/Bugs/ '$page' on the TWiki issue tracking site
TWikirev http://develop.twiki.org/trac/changeset/ revision $page of TWiki svn
TWikisvn http://svn.twiki.org/svn/twiki/trunk/ Download '$page' file from TWiki SVN repository
UseMod http://www.usemod.com/cgi-bin/wiki.pl? '$page' on 'UseMod' Wiki site
VisualWorks http://wiki.cs.uiuc.edu/VisualWorks/ '$page' on 'VisualWorks' site
Wiki http://c2.com/cgi/wiki? '$page' on the original 'WikiWikiWeb' site
Wikipedia http://en.wikipedia.org/wiki/ '$page' on 'Wikipedia'
ZWiki http://joyful.com/zwiki/ '$page' on Zope's Wiki

Note: This topic configures the InterwikiPlugin.

Related Topics: TWikiPlugins, UserDocumentationCategory, AdminDocumentationCategory

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Topic revision: r13 - 2016-03-11 - PhilipLijnzaad
 
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